The Citadel is an archive of information for George R.R. Martin's A Song of Ice and Fire.
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Am I reading things between the lines that aren't really there, but was Rhaegar and Aerys' relationship not all that it could be?
There were definitely tensions between father and son. More will be revealed in future books.
The Westeros network consists of several different sites, including a forum and a wiki, for all your A Song of Ice and Fire needs.